SnakeCharm downloads statistics

SnakeCharm plugin for PyCharm / IntelliJ Platform IDEs adds IDE support for Snakemake workflows language, that is widely used in Bioinformatics. The plugin is developed by JetBrains Research Team, for more details see project home page.

Please report features suggestions or found bugs to project issue tracker.

Features highlights:

NB: To activate all features please enable Snakemake support in Settings | Languages & Frameworks | Snakemake. Snakemake framework should be configured to use python interpreter with snakemake module installed.

Features available in Snakefile and *.smk, *.rule, *.rules files:

• Python code syntax highlighting • Snakemake specific syntax highlighting • Highlight rule section names • Syntax highlighting for Snakemake string format language, e.g. in strings like "results/sample_{genome}.bam". • Special highlighting for rule wildcards and their usages • Code completion and goto to declaration for: • Snakemake specific variables (e.g. config, rules, etc); • Snakemake api methods like expand, temp, etc. • Rules names after rules., checkpoints after checkpoints. • Rules sections names after rules.my_rule_name. • Rule sections keywords arguments, e.g. after rules.my_rule_name.input. • Wildcards and sections names in shell, input, message, params and other sections • Paths in sections: configfile, workdir, conda, include. • Completion for wrappers names in wrapper: sections • Wrappers with detailed meta.yaml provides completion for rule section keyword arguments in output, input, params sections • Python methods and variables • Structure view for Snakemake files • Rules blocks folding • Open rule declaration by name using Navigate|Symbol... • Quick documentation for wrappers, that includes links to wrapper source code and paga in wrappers repository • Multiple code inspections for possible errors in snakemake files

Useful links:

• Project Home Page • Full Changelog • SnakeCharm at GitHub • SnakeCharm in JetBrains Plugin Repository